PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000139.1_g00046.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 506aa    MW: 52707 Da    PI: 7.4842
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000139.1_g00046.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.86.5e-411222283115
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                               +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s+
  Itr_sc000139.1_g00046.1 122 LAKRSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSA 207
                              579*****************************************************************999777777777774444 PP

                      TCP  88 gkaaksaakskksqksaasalnlakesr 115
                              +       +sk++++s +++l+la+ ++
  Itr_sc000139.1_g00046.1 208 P-------PSKSAPHSFHNTLALAAAHH 228
                              4.......44444444444444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-38126220IPR005333Transcription factor, TCP
PROSITE profilePS5136928.542127181IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEPSNTQSNN KPNSTTASQP FNHQHGGARS APFISSISIH APAAGRVLGG GNNTSGTTGS  60
GSGSSSISPS SSSTSASTAS AAAPAEPPRL VDASLAIATR SEALLDPSKK PQPAAAAAAQ  120
QLAKRSTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA  180
ATGTGTIPAN FSTLNISLRS SGSTLSAPPS KSAPHSFHNT LALAAAHHPP AHPFEEGFSH  240
MLGFHQTPHF LTPNQIADTI SGGGDDGGGG GGRGQETTEN YLGKRYREDL FKDEGSSNPQ  300
GESPGAGAGN SDSPSNKQFK PASMNLPKPI QETTAGPSST MFRHTNMMPA AAMWAVASGG  360
TAGAAAGTFS MLPVSPVAST SGSEPGQMWA FQTSTGNTLQ APLHFMSRFN LPGNLDFPAS  420
RATPLQLGSM IMQQQQQQHQ QQPSQQLGLG MPDGNLGMLA AFNAYPRTGL NMNSDHHQTG  480
RHPLEHHQQH HQTPDDSADD DPNTSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795828.11e-170PREDICTED: transcription factor TCP8-like
TrEMBLG3BGV11e-164G3BGV1_SOLLC; TCP transcription factor 11
STRINGPGSC0003DMT4000641641e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-65TCP family protein